Update:

Swapped out the replacement distributor under warranty for another new one and no change to the erratic spark. The spark seems stronger (White/Blue) compared to the original OE stuff that was in it, but the spark is stilling missing randomly on all cylinders. At one point I was able to get some misfire codes, but it hasn't reproduced the codes again while it's been sitting, while I've been working on it, and it's pretty much just idled and not been driven.

I've replaced the whole ignition system to include the CKF sensor and tested all the connections to and from the computer, and they're all within Honda resistance specs.

I am very confident in my wrenching skills and this problem is taking me to my wits end. Any ideas/suggestions?