i have an 03 civic sedan with skunk 2s and mine looks almost exactly like yours although i think i have a very smaller drop in the front but overall looks normal

 

looks a little weird to me....i say take em off, for real. if i had a camera with me i would show you what mine look like. to me, it seems like you have an elephant in the trunk, something doesnt look right. take em off, try to put the on as correct as possible, and look again. if that doesnt work, put stocks back on until you get new struts. try Tokico, i have em, and they coe highly recommended.